Introduction to rEDM: Empirical Dynamics Modeling in R

This is a series of tutorials for the School on Physics Applications in Biology of 2018, created by Brenno Cabella, Paulo Inácio Prado, Renato Mendes Coutinho, Marina Rillo, Rafael Lopes and Roberto Kraenkel.

0. Installation instructions

1. A Quick Tour through State Space Reconstruction

Download the notebook or the R file.

2. Simplex projection made simple

Download the notebook or the R file.

3. Convergent cross-mapping (CCM)

Download the notebook or the R file.

4. Readings and resources

Slides to the Workshop on Time series analysis by a causation criteria:

• Day 1: Takens Theorem and its consequences
• Day 2: Simplex projection
• Day 3: Real data, real problems